Alexander Holehouse, PhD

Academic Department Biochemistry and Molecular Biophysics
Research Program Mechanisms of Cancer Biology Program
Alexander Holehouse

Researcher Background

Primary Academic Title

Associate Professor, Department of Biochemistry & Molecular Biophysics, WashU Medicine

Training

  • 2017 - 2019: Postdoctoral Fellow, Department of Biomedical Engineering, Washington University, St. Louis, MO

Education

  • 2010: MBioch, University of Oxford, University of Oxford, UK
  • 2011: MSc, Imperial College London, UK
  • 2017: PhD, Washington University, St. Louis, MO

Research & Select Publications

Research Interest

We work on understanding the molecular basis for how intrinsically disordered regions (IDRs) carry out cellular functions, and how this goes wrong in disease. Disordered regions are protein regions that lack a fixed 3D structure in solution, instead occupying highly heterogenous collection of interconverting conformations. Given almost every cancer-associated protein contains larger IDRs, this is a rich area for us in terms of relating molecular biophysics to human disease. Our goal is to enable the mechanistic interpretation of mutations in IDRs in the context of cancer – i.e. how and why do mutations cause disordered regions to misfunction, and – ultimately – how can we address those vulnerabilities through therapeutic intervention.

Research Publications

Rational design of disordered proteins for sequence-function investigation.
Authors:

Hunter K, Brandt T, Guadalupe K, one or more additional authors omitted Holehouse AS, one or more additional authors omitted Emenecker RJ

Journal & Year:

Nature • 2026

Accurate predictions of disordered protein ensembles with STARLING.
Authors:

Novak B, Lotthammer JM, Emenecker RJ, Holehouse AS

Journal & Year:

Nature • 2026

The filamentous ultrastructure of the PopZ condensate is required for its cellular function.
Authors:

Scholl D, Boyd T, Latham AP, one or more additional authors omitted Holehouse AS, one or more additional authors omitted Lasker K

Journal & Year:

Nat Struct Mol Biol • 2026

Multiomic Characterization of Pre- and Post-Neoadjuvant Chemotherapy-Treated Ovarian Cancer Reveals Mediators of Tumorigenesis and Chemotherapy Response.
Authors:

Valentine MC, Mullen MM, Kotnik EN, one or more additional authors omitted Holehouse AS, one or more additional authors omitted Fuh KC

Journal & Year:

Cancer Res • 2025

Sequence-based prediction of intermolecular interactions driven by disordered regions.
Authors:

Ginell GM, Emenecker RJ, Lotthammer JM, one or more additional authors omitted Holehouse AS

Journal & Year:

Science • 2025

Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms.
Authors:

Lambourne L, Mattioli K, Santoso C, one or more additional authors omitted Holehouse AS, one or more additional authors omitted Fuxman Bass JI

Journal & Year:

Mol Cell • 2025

Disentangling Folding from Energetic Traps in Simulations of Disordered Proteins.
Authors:

Lotthammer JM, Holehouse AS

Journal & Year:

J Chem Inf Model • 2025

Molecular determinants of condensate composition.
Authors:

Holehouse AS, Alberti S

Journal & Year:

Mol Cell • 2025

Phosphorylation of disordered proteins tunes local and global intramolecular interactions.
Authors:

Usher ET, Fossat MJ, Holehouse AS

Journal & Year:

Biophys J • 2024

Rational Protein Engineering to Enhance MHC-Independent T-cell Receptors.
Authors:

Chang JF, Landmann JH, Chang TC, one or more additional authors omitted Holehouse AS, Singh N

Journal & Year:

Cancer Discov • 2024

Partial wrapping of single-stranded DNA by replication protein A and modulation through phosphorylation.
Authors:

Chadda R, Kaushik V, Ahmad IM, one or more additional authors omitted Holehouse AS, one or more additional authors omitted Antony E

Journal & Year:

Nucleic Acids Res • 2024

Identification of plant transcriptional activation domains.
Authors:

Morffy N, Van den Broeck L, Miller C, one or more additional authors omitted Holehouse AS, one or more additional authors omitted Strader LC

Journal & Year:

Nature • 2024

Phosphorylation of disordered proteins tunes local and global intramolecular interactions.
Authors:

Usher ET, Fossat MJ, Holehouse AS

Journal & Year:

bioRxiv • 2024

Direct prediction of intermolecular interactions driven by disordered regions.
Authors:

Ginell GM, Emenecker RJ, Lotthammer JM, Usher ET, Holehouse AS

Journal & Year:

bioRxiv • 2024

Conserved molecular recognition by an intrinsically disordered region in the absence of sequence conservation.
Authors:

Alston JJ, Soranno A, Holehouse A

Journal & Year:

Res Sq • 2024