Dong Xu View Appointment Options Dong Xu Appointment Options Research & Selected Publications Share Copy Link Email Link Print Page Facebook X Instagram LinkedIn Back Gmail Outlook Apple Mail Yahoo! Mail Appointment Options Whether you’re seeking a new patient appointment or exploring treatment options and looking for a second opinion, our Siteman care coordinators are ready to assist you. Request an Appointment Call Us Refer a Patient Research & Selected Publications Applications of Large Language Models and Prompt Optimization for Knowledge Extraction from Biological Pathway Figures Applications of Large Language Models and Prompt Optimization for Knowledge Extraction from Biological Pathway Figures Authors: Azam M, Zeng S, Aldihis H, Popescu M, Xu D Journal & Year: IEEE J Biomed Health Inform | 2025 scBSP: a fast and accurate tool for identifying spatially variable features from high-resolution spatial omics data scBSP: a fast and accurate tool for identifying spatially variable features from high-resolution spatial omics data Authors: Li J, Raina M, Wang Y, [...]one or more additional authors omitted Xu D Journal & Year: Bioinformatics | 2025 TrimNN: characterizing cellular community motifs for studying multicellular topological organization in complex tissues TrimNN: characterizing cellular community motifs for studying multicellular topological organization in complex tissues Authors: Yu Y, Wang S, Li J, [...]one or more additional authors omitted Xu D, Wang J Journal & Year: Nat Commun | 2025 ProtLoc-GRPO: Cell line-specific subcellular localization prediction using a graph-based model and reinforcement learning ProtLoc-GRPO: Cell line-specific subcellular localization prediction using a graph-based model and reinforcement learning Authors: Zeng S, Zhang W, Li C, [...]one or more additional authors omitted Xu D Journal & Year: bioRxiv | 2025 Defining Keypoints to Align H&E Images and Xenium DAPI-Stained Images Automatically Defining Keypoints to Align H&E Images and Xenium DAPI-Stained Images Automatically Authors: Lin Y, Wang Y, Wang J, [...]one or more additional authors omitted Xu D Journal & Year: Cells | 2025 IRnet: Immunotherapy response prediction using pathway knowledge-informed graph neural network IRnet: Immunotherapy response prediction using pathway knowledge-informed graph neural network Authors: Jiang Y, Immadi MS, Wang D, [...]one or more additional authors omitted Xu D, Joshi T Journal & Year: J Adv Res | 2025 Harnessing the Power of Single-Cell Large Language Models with Parameter Efficient Fine-Tuning using scPEFT Harnessing the Power of Single-Cell Large Language Models with Parameter Efficient Fine-Tuning using scPEFT Authors: He F, Fei R, Krull JE, [...]one or more additional authors omitted Xu D Journal & Year: Res Sq | 2025 scBSP: A fast and accurate tool for identifying spatially variable features from high-resolution spatial omics data scBSP: A fast and accurate tool for identifying spatially variable features from high-resolution spatial omics data Authors: Li J, Raina M, Wang Y, [...]one or more additional authors omitted Xu D Journal & Year: bioRxiv | 2025
